Katherine Huang
Bioinformatics Specialist
Civil and Environmental Engineering
MIT 48-336
15 Vassar Street
Cambridge, MA 02139
Phone: (617) 253-3310
Fax: (617) 258-7009
Email: khhuang at mit.edu
Education:
| 1994 | B.S. Forestry, National Taiwan University, Taipei, Taiwan |
| 1997 | M.S. Biology-Cell & Molecular Biology, UC-Riverside, California |
Publications:
He Q, Huang KH, He Z, Alm EJ, Fields MW, Hazen TC, Arkin AP, Wall JD, Zhou J.
Energetic Consequences of Nitrite Stress in Desulfovibrio vulgaris Hildenborough, Inferred from Global Transcriptional Analysis.
Appl Environ Microbiol. 2006 Jun;72(6):4370-81.
Mukhopadhyay A, et al, Huang K, et al, Keasling J.
Salt stress in Desulfovibrio vulgaris Hildenborough: An integrated genomics approach.
J Bacteriol. 2006 Jun;188(11):4068-78.
Chhabra SR, He Q, Huang KH, Gaucher SP, Alm EJ, He Z, Hadi MZ, Hazen TC, Wall JD, Zhou J, Arkin AP, Singh AK.
Global analysis of heat shock response in Desulfovibrio vulgaris Hildenborough.
J Bacteriol. 2006 Mar;188(5):1817-28.
Leaphart AB, Thompson DK, Huang K, Alm E, Wan XF, Arkin A, Brown SD, Wu L, Yan T, Liu X, Wickham GS, Zhou J.
Transcriptome profiling of Shewanella oneidensis gene expression following exposure to acidic and alkaline pH.
J Bacteriol. 2006 Feb;188(4):1633-42.
Brown SD, Martin M, Deshpande S, Seal S, Huang K, Alm E, Yang Y, Wu L, Yan T, Liu X, Arkin A, Chourey K, Zhou J, Thompson DK.
Cellular response of Shewanella oneidensis to strontium stress.
Appl Environ Microbiol. 2006 Jan;72(1):890-900.
Alm EJ, Huang KH, Price MN, Koche RP, Keller K, Dubchak IL, Arkin AP.
The MicrobesOnline Web site for comparative genomics.
Genome Res. 2005 Jul;15(7):1015-22.
Price MN, Huang KH, Arkin AP, Alm EJ.
Operon formation is driven by co-regulation and not by horizontal gene transfer.
Genome Res. 2005 Jun;15(6):809-19.
Price MN, Huang KH, Alm EJ, Arkin AP.
A novel method for accurate operon predictions in all sequenced prokaryotes.
Nucleic Acids Res. 2005 Feb 8;33(3):880-92. Print 2005.
Martinez D, Larrondo LF, Putnam N, Gelpke MD, Huang K, et al, Rokhsar D.
Genome sequence of the lignocellulose degrading fungus Phanerochaete chrysosporium strain RP78.
Nat Biotechnol. 2004 Jun;22(6):695-700. Epub 2004 May 2. Erratum in: Nat Biotechnol. 2004 Jul;22(7):899.
Huang H, Goldberg EM, Zidovetzki R.
Ceramides modulate protein kinase C activity and perturb the structure of Phosphatidylcholine/Phosphatidylserine bilayers.
Biophys J. 1999 Sep;77(3):1489-97.
Huang H, Goldberg EM, Zidovetzki R.
Ceramides perturb the structure of phosphatidylcholine bilayers and modulate the activity of phospholipase A2.
Eur Biophys J. 1998;27(4):361-6.